RegulonDB RegulonDB 10.7: Gene Form
   

tfaQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

stfQ pinQ tfaQ nohA tfaQp6 tfaQp6

Gene      
Name: tfaQ    Texpresso search in the literature
Synonym(s): ECK1539, G6820, b1546, ydfM
Genome position(nucleotides): 1634310 <-- 1634885 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.26
External database links:  
ASAP:
ABE-0005166
ECHOBASE:
EB3586
OU-MICROARRAY:
b1546
PORTECO:
tfaQ
REGULONDB:
b1546
STRING:
511145.b1546
M3D: tfaQ
COLOMBOS: tfaQ
PortEco: b1546


Product      
Name: Qin prophage; putative tail fiber assembly protein TfaQ
Synonym(s): TfaQ, YdfM
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 21.338
Isoelectric point: 4.177
Motif(s):
 
Type Positions Sequence
72 -> 191 RGKTVYDVASGDALFISELGPLPENVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEEISLLEAWKKYRVLLNRVDTSTAQDIEWPALP

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6820-MONOMER
ECOLIWIKI:
b1546
INTERPRO:
IPR003458
PFAM:
PF02413
PRIDE:
P76155
PROTEINMODELPORTAL:
P76155
REFSEQ:
NP_416064
SMR:
P76155
UNIPROT:
P76155


Operon      
Name: nohA-stfQ-tfaQ         
Operon arrangement:
Transcription unit        Promoter
 


Transcriptional Regulation      
Display Regulation             
Repressed by: Fur


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter tfaQp6 1634956 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


RegulonDB