RegulonDB RegulonDB 10.7: Gene Form
   

ynfN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

gnsB ynfN ynfR anti-terminator terminator ynfNp5 ynfNp5 gnsBp gnsBp

Gene      
Name: ynfN    Texpresso search in the literature
Synonym(s): ECK1545, G6824, b1551
Genome position(nucleotides): 1637954 <-- 1638109 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.59
External database links:  
ASAP:
ABE-0005180
ECHOBASE:
EB4131
OU-MICROARRAY:
b1551
PORTECO:
ynfN
REGULONDB:
b1551
STRING:
511145.b1551
M3D: ynfN
COLOMBOS: ynfN
PortEco: b1551


Product      
Name: Qin prophage; protein YnfN
Synonym(s): YnfN
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 5.639
Isoelectric point: 6.224
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6824-MONOMER
ECOLIWIKI:
b1551
PRIDE:
P76157
PROTEINMODELPORTAL:
P76157
REFSEQ:
NP_416069
SMR:
P76157
UNIPROT:
P76157


Operon      
Name: ynfN         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ynfNp5 1638197 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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