RegulonDB RegulonDB 10.7: Gene Form
   

ydfV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

flxA ydfV relB Fis RelB-RelE RelB-RelE RelB RelB-RelE RelB RelB-RelE flxAp flxAp TSS_1866 TSS_1866 relBp relBp TSS_1865 TSS_1865

Gene      
Name: ydfV    Texpresso search in the literature
Synonym(s): ECK1559, G6832, b1565
Genome position(nucleotides): 1645897 --> 1646202 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.08
External database links:  
ASAP:
ABE-0005231
ECHOBASE:
EB3595
OU-MICROARRAY:
b1565
PORTECO:
ydfV
REGULONDB:
b1565
STRING:
511145.b1565
M3D: ydfV
COLOMBOS: ydfV
PortEco: b1565


Product      
Name: Qin prophage; protein YdfV
Synonym(s): YdfV
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 11.308
Isoelectric point: 10.262
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6832-MONOMER
ECOLIWIKI:
b1565
PRIDE:
P76163
PROTEINMODELPORTAL:
P76163
REFSEQ:
NP_416083
SMR:
P76163
UNIPROT:
P76163


Operon      
Name: ydfV         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1865 1645901 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1866 1646073 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB