RegulonDB RegulonDB 10.7: Gene Form
   

ydfX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

dicA ydfX dicC ydfW DicA terminator TSS_1868 TSS_1868 TSS_1867 (cluster) TSS_1867 (cluster) dicCp dicCp

Gene      
Name: ydfX    Texpresso search in the literature
Synonym(s): ECK1562, G6835, b1568
Genome position(nucleotides): 1647346 <-- 1647636 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.52
External database links:  
ASAP:
ABE-0005239
ECHOBASE:
EB3597
ECOO157CYC:
Z2047
OU-MICROARRAY:
b1568
PORTECO:
ydfX
REGULONDB:
b1568
STRING:
316407.85675027
M3D: ydfX
COLOMBOS: ydfX
PortEco: b1568


Product      
Name: Qin prophage; uncharacterized protein YdfX
Synonym(s): YdfX
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 10.976
Isoelectric point: 8.507
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6835-MONOMER
ECOLIWIKI:
b1568
ECOO157CYC:
Z2047-MONOMER
INTERPRO:
IPR037042
PFAM:
PF06254
PRIDE:
P76165
PROTEINMODELPORTAL:
P76165
REFSEQ:
NP_416086
SMR:
P76165
UNIPROT:
P76165


Operon      
Name: dicC-ydfXW         
Operon arrangement:
Transcription unit        Promoter
 


Transcriptional Regulation      
Display Regulation             
Repressed by: DicA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1867 (cluster) 1647930 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_1868 1647948 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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