RegulonDB RegulonDB 10.7: Gene Form
   

insD-7 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

intQ ydfE insD-7 ydfD ynfP dicB TSS_1869 TSS_1869

Gene      
Name: insD-7    Texpresso search in the literature
Synonym(s): ECK1572, G6836, b1578, insD
Type: Pseudo Gene
Genome position(nucleotides): 1650881 --> 1651537 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.34
External database links:  
ASAP:
ABE-0005268
ECHOBASE:
EB4727
ECOO157CYC:
Z0322
OU-MICROARRAY:
b1578
PORTECO:
insD
REGULONDB:
b1578
STRING:
511145.b4273
M3D: insD-7
COLOMBOS: insD-7
PortEco: b1578


Product      
Name: Qin prophage; putative transposase
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 8.39
Motif(s):
 
Type Positions Sequence
23 -> 206 KPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRA

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6836-MONOMER
ECOLIWIKI:
b1578
ECOO157CYC:
Z0322-MONOMER
INTERPRO:
IPR001584
INTERPRO:
IPR012337
INTERPRO:
IPR036397
MODBASE:
P76167
PFAM:
PF00665
PRIDE:
P0CF60
PROSITE:
PS50994
PROTEINMODELPORTAL:
P0CF60
REFSEQ:
NP_416095
SMR:
P0CF60
UNIPROT:
P0CF60


Operon      
Name: dicB-ydfDE-insD-7-intQ         
Operon arrangement:
Transcription unit        Promoter
dicB-ydfDE-insD-intQ


Transcriptional Regulation      
Display Regulation             
Repressed by: DicA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1869 1651862 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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