RegulonDB RegulonDB 10.7: Gene Form
   

intQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

intQ ydfE insD-7 ydfD ynfP dicB TSS_1869 TSS_1869

Gene      
Name: intQ    Texpresso search in the literature
Synonym(s): ECK1573, G6837, b1579
Type: Pseudo Gene
Genome position(nucleotides): 1651512 --> 1652708 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 42.19
External database links:  
ASAP:
 ABE-0005270
ECHOBASE:
 EB2980
OU-MICROARRAY:
 b1579
PORTECO:
 intQ
REGULONDB:
 b1579
STRING:
 316407.85675030
M3D: intQ
COLOMBOS: intQ
PortEco: b1579


Product      
Name: Qin prophage; putative defective integrase
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 9.984
Motif(s):
 
Type Positions Sequence
274 -> 274 F

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-10039N
ECOCYC:
 G6837-MONOMER
ECOLIWIKI:
 b1579
INTERPRO:
 IPR022000
INTERPRO:
 IPR011010
INTERPRO:
 IPR010998
INTERPRO:
 IPR002104
INTERPRO:
 IPR013762
MODBASE:
 P76168
PFAM:
 PF12167
PFAM:
 PF00589
PRIDE:
 P76168
PROTEINMODELPORTAL:
 P76168
REFSEQ:
 NP_416096
SMR:
 P76168
UNIPROT:
 P76168


Operon      
Name: dicB-ydfDE-insD-7-intQ         
Operon arrangement:
Transcription unit        Promoter
dicB-ydfDE-insD-intQ


Transcriptional Regulation      
Display Regulation             
Repressed by: DicA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1869 1651862 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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