RegulonDB RegulonDB 10.8: Gene Form
   

ydgI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydgI ydgH folM ydgC

Gene      
Name: ydgI    Texpresso search in the literature
Synonym(s): ECK1600, G6861, arcD, b1605
Genome position(nucleotides): 1679557 --> 1680939 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.51
External database links:  
ASAP:
ABE-0005362
ECHOBASE:
EB3689
OU-MICROARRAY:
b1605
PortEco:
ydgI
STRING:
511145.b1605
COLOMBOS: ydgI


Product      
Name: putative arginine:ornithine antiporter
Synonym(s): ArcD, YdgI
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 49.501
Isoelectric point: 8.756
Motif(s):
 
Type Positions Sequence
385 -> 405 LHKAVGVGACIYGLWLLYASG
5 -> 442 LGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWGITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSYLVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVATLAKLLPLGLFVVLAMMMFKLDTFKLDFTGLALGVPVWEQVKNTMLITLWVFIGVEGAVVVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEMMGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASLWLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVGACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMV
39 -> 59 LLIGWGITGAGILLLAFAMLI
236 -> 256 LAVLSALGVYLLVTLLSLGVV
440 -> 460 EMVLIGMLLIASVPATWMLVG

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015297 - antiporter activity
GO:0022857 - transmembrane transporter activity
biological_process GO:0006865 - amino acid transport
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Evidence: [NAS] Non-traceable author statement
Reference(s): [1] Herzberg M., et al., 2006
[2] Jindal S., et al., 2019
External database links:  
DIP:
DIP-48049N
ECOCYC:
ARCD-MONOMER
ECOLIWIKI:
b1605
INTERPRO:
IPR004754
INTERPRO:
IPR002293
PANTHER:
PTHR11785
PFAM:
PF13520
PRIDE:
P0AAE5
REFSEQ:
NP_416122
SMR:
P0AAE5
UNIPROT:
P0AAE5


Operon      
Name: ydgI-folM         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Herzberg M., Kaye IK., Peti W., Wood TK., 2006, YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport., J Bacteriol 188(2):587-98

 [2] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195


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