RegulonDB RegulonDB 10.8: Gene Form
   

ydgA gene in Escherichia coli K-12 genome

Gene      
Name: ydgA    Texpresso search in the literature
Synonym(s): ECK1609, G6865, b1614
Genome position(nucleotides): 1689852 --> 1691360 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.04
External database links:  
ASAP:
ABE-0005402
ECHOBASE:
EB2351
OU-MICROARRAY:
b1614
PortEco:
ydgA
STRING:
511145.b1614
COLOMBOS: ydgA


Product      
Name: DUF945 domain-containing protein YdgA
Synonym(s): YdgA
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 54.689
Isoelectric point: 4.8
Motif(s):
 
Type Positions Sequence
20 -> 502 GGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLAQEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ
186 -> 198 GKAISLSGEAQSG
1 -> 19 MNKSLVAVGVIVALGVVWT
322 -> 323 LA

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
molecular_function GO:0042802 - identical protein binding
GO:0042803 - protein homodimerization activity
biological_process GO:0071978 - bacterial-type flagellum-dependent swarming motility
External database links:  
DIP:
DIP-11709N
ECOCYC:
G6865-MONOMER
ECOLIWIKI:
b1614
INTERPRO:
IPR010352
MINT:
MINT-1239915
PFAM:
PF06097
PRIDE:
P77804
REFSEQ:
NP_416131
SMR:
P77804
UNIPROT:
P77804


Operon      
Name: ydgA         
Operon arrangement:
Transcription unit        Promoter
ydgA


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1897 1689797 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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