RegulonDB RegulonDB 10.8: Gene Form
   

ydhK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydhK ydhJ sodC ydhI

Gene      
Name: ydhK    Texpresso search in the literature
Synonym(s): ECK1641, G6885, b1645
Genome position(nucleotides): 1722121 --> 1724133 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.76
External database links:  
ASAP:
 ABE-0005503
ECHOBASE:
 EB3703
OU-MICROARRAY:
 b1645
PortEco:
 ydhK
STRING:
 511145.b1645
COLOMBOS: ydhK


Product      
Name: putative transporter YdhK
Synonym(s): YdhK
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 75.267
Isoelectric point: 9.575
Motif(s):
 
Type Positions Sequence
437 -> 454 LWQFLLFLFPLLATMQLL
493 -> 510 NLAKIVGVALAWLAFAIL
461 -> 483 FAALWGQLIVFMGSFIAVTNPPV
20 -> 662 QWRYALRNTIAMCLALTVAYYLNLDEPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSAWLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGILCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQILTMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREILEQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRLQSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLAAISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLATMQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFAILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARRWLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATLEELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQA
23 -> 42 YALRNTIAMCLALTVAYYLN

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
 G6885-MONOMER
ECOLIWIKI:
 b1645
INTERPRO:
 IPR006726
PANTHER:
 PTHR30509:SF1
PFAM:
 PF04632
PRIDE:
 P76186
REFSEQ:
 NP_416162
UNIPROT:
 P76186


Operon      
Name: ydhIJK         
Operon arrangement:
Transcription unit        Promoter
ydhIJK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

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