RegulonDB RegulonDB 10.8: Gene Form
   

sodC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydhK ydhF sodC sodCp sodCp

Gene      
Name: sodC    Texpresso search in the literature
Synonym(s): ECK1642, G6886, b1646
Genome position(nucleotides): 1724134 <-- 1724655 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.87
External database links:  
ASAP:
 ABE-0005505
ECHOBASE:
 EB3195
OU-MICROARRAY:
 b1646
PortEco:
 sodC
STRING:
 511145.b1646
COLOMBOS: sodC


Product      
Name: superoxide dismutase (Cu-Zn)
Synonym(s): SodC, bacteriocuprein
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 17.681
Isoelectric point: 6.389
Motif(s):
 
Type Positions Sequence
20 -> 173 ASEKVEMNLVTSQGVGQSIGSVTITETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAPRLKSLDEIKDKALMVHVGGDNMSDQPKPLGGGGERYACGVIK
34 -> 172 VGQSIGSVTITETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHEGPEGAGHLGDLPALVVNNDGKATDAVIAPRLKSLDEIKDKALMVHVGGDNMSDQPKPLGGGGERYACGVI
1 -> 19 MKRFSLAILALVVATGAQA

 
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.6 - protection --> 5.6.2 - detoxification
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
molecular_function GO:0005507 - copper ion binding
GO:0046872 - metal ion binding
GO:0016491 - oxidoreductase activity
GO:0016209 - antioxidant activity
GO:0008270 - zinc ion binding
GO:0004784 - superoxide dismutase activity
biological_process GO:0006801 - superoxide metabolic process
GO:0019430 - removal of superoxide radicals
GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G6886-MONOMER
ECOLIWIKI:
 b1646
INTERPRO:
 IPR024134
INTERPRO:
 IPR018152
INTERPRO:
 IPR036423
INTERPRO:
 IPR001424
MODBASE:
 P0AGD1
PANTHER:
 PTHR10003
PDB:
 1ESO
PFAM:
 PF00080
PRIDE:
 P0AGD1
PROSITE:
 PS00332
REFSEQ:
 NP_416163
SMR:
 P0AGD1
SWISSMODEL:
 P0AGD1
UNIPROT:
 P0AGD1


Operon      
Name: sodC         
Operon arrangement:
Transcription unit        Promoter
sodC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References



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