RegulonDB

Gene
Name:	ydiV
Synonym(s):	ECK1705, G6925, b1707, rflP
Genome position(nucleotides):	1791307 <-- 1792020 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	42.3
External database links:

ASAP:	ABE-0005696
ECHOBASE:	EB3738
OU-MICROARRAY:	b1707
PortEco:	ydiV
STRING:	511145.b1707
COLOMBOS:	ydiV

Product

Name:

anti-FlhDC factor

Synonym(s):

RflP, YdiV

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

27.046

Isoelectric point:

5.817

Motif(s):

Type	Positions	Sequence
	1 -> 237	MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIPTSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAGELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFTRVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHALQGCLWPAVPINQITTLVQR
	13 -> 222	CYFLPIRDNQQVLVGVELITHFSSEDGTVRIPTSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAGELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFTRVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHALQGCL

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
Gene Ontology Terms (GO)
	molecular_function	GO:0008134 - transcription factor binding
	biological_process	GO:0043433 - negative regulation of DNA-binding transcription factor activity GO:2000678 - negative regulation of transcription regulatory region DNA binding GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility

Note(s):

Note(s): ...[more].

Evidence:

[IE] Inferred from experiment

Reference(s):

[1] Wada T., et al., 2012

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PDB:

PDB:

PFAM:

PRIDE:

PROSITE:

REFSEQ:

SMR:

UNIPROT:

Operon

Name:

ydiV

Operon arrangement:

Transcription unit	Promoter
ydiV	ydiVp

Transcriptional Regulation
	Display Regulation
Activated by:	SdiA

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_1997	1792156	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1998	1792191	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_1999	1792637	reverse	nd	[RS-EPT-CBR]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Wada T., Hatamoto Y., Kutsukake K., 2012, Functional and expressional analyses of the anti-FlhD4C2 factor gene ydiV in Escherichia coli., Microbiology 158(Pt 6):1533-42
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Wada T., Hatamoto Y., Kutsukake K., 2012, Functional and expressional analyses of the anti-FlhD4C2 factor gene ydiV in Escherichia coli., Microbiology 158(Pt 6):1533-42

[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.