RegulonDB RegulonDB 10.6.3: Gene Form
   

ynjI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

topB gdhA ynjI RcsB ynjIp1 ynjIp1 ynjIp4 ynjIp4 ynjIp ynjIp ynjIp5 ynjIp5 TSS_2070 TSS_2070 TSS_2069 TSS_2069 TSS_2068 TSS_2068

Gene      
Name: ynjI    Texpresso search in the literature
Synonym(s): ECK1760, G6956, b1762
Genome position(nucleotides): 1843831 <-- 1844871 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
41.31
External database links:  
ASAP:
ABE-0005867
ECHOBASE:
EB3767
ECOCYC:
G6956
ECOLIHUB:
ynjI
OU-MICROARRAY:
b1762
REGULONDB:
b1762
STRING:
511145.b1762
M3D: ynjI
COLOMBOS: ynjI
PortEco: b1762


Product      
Name: DUF1266 domain-containing protein YnjI
Synonym(s): YnjI
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 40.346
Isoelectric point: 7.073
Motif(s):
 
Type Positions Sequence
36 -> 36 A
39 -> 59 LCKWGFYLTCVVAVMFVFAAI
167 -> 338 SLEDQWGIEDSESYCALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIWAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPW
235 -> 255 SAKLIWAAELSWMISISSTAF
69 -> 89 LITAGCSFLYLLIMMGLIVRA

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G6956-MONOMER
ECOLIWIKI:
b1762
INTERPRO:
IPR009677
PFAM:
PF06889
PRIDE:
P76228
PROTEINMODELPORTAL:
P76228
REFSEQ:
NP_416276
UNIPROT:
P76228


Operon      
Name: ynjI         
Operon arrangement:
Transcription unit        Promoter
null


Transcriptional Regulation      
Display Regulation             
Activated by: RcsB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2068 1842691 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2069 1843057 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2070 1843063 forward nd [RS-EPT-CBR] [1]
  promoter ynjIp5 1844886 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ynjIp4 1844902 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ynjIp1 1845011 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Mu¿¿iz-Rascado L, Garc¿¿a-Sotelo JS, Weiss V, Solano-Lira H, Mart¿¿nez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hern¿¿ndez S, Alquicira-Hern¿¿ndez K, L¿¿pez-Fuentes A, Porr¿¿n-Sotelo L, Huerta AM, Bonavides-Mart¿¿nez C, Balderas-Mart¿¿nez YI, Pannier L, Olvera M, Labastida A, Jim¿¿nez-Jacinto V, Vega-Alvarado L, Del Moral-Ch¿¿vez V, Hern¿¿ndez-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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