RegulonDB

Gene
Name:	ydjF
Synonym(s):	ECK1768, G6957, b1770
Genome position(nucleotides):	1854096 <-- 1854854 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	42.29
External database links:

ASAP:	ABE-0005897
ECHOBASE:	EB3255
OU-MICROARRAY:	b1770
PortEco:	ydjF
STRING:	511145.b1770
COLOMBOS:	ydjF

Product

Name:

putative DNA-binding transcriptional regulator YdjF

Synonym(s):

YdjF

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

28.261

Isoelectric point:

7.059

Motif(s):

Type	Positions	Sequence
	3 -> 58	AKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVL
	6 -> 60	RIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
	20 -> 39	VTVSNLSGIFQVTEETIRRD
	77 -> 233	YEEKQLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDK

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0003677 - DNA binding GO:0005515 - protein binding GO:0003700 - DNA-binding transcription factor activity
	biological_process	GO:0006355 - regulation of transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[AIFS] Automated inference of function from sequence

Reference(s):

[1] Perez-Rueda E., et al., 2004

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PFAM:

PRIDE:

PRINTS:

PROSITE:

PROSITE:

REFSEQ:

SMART:

SMR:

UNIPROT:

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	ydjEp5	1853983	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.866. P-value: 9.421e-5 Read more >	[ICWHO]	[2]
promoter	ydjEp6	1854041	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.546. P-value: 7.411e-5 Read more >	[ICWHO]	[2]
promoter	ydjFp7	1854886	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 6.106. P-value: 2.238e-6 Read more >	[ICWHO]	[2]
promoter	ydjFp1	1854924	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -3.51. P-value: 8.610e-5 Read more >	[ICWHO]	[2]

Reference(s)
[1] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50
[2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78