RegulonDB RegulonDB 10.10: Gene Form
   

yeaH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: yeaH    Texpresso search in the literature
Synonym(s): ECK1782, G6970, b1784
Genome position(nucleotides): 1868955 --> 1870238 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.14
External database links:  
ASAP:
 ABE-0005938
ECHOBASE:
 EB3267
ECOLIHUB:
 yeaH
OU-MICROARRAY:
 b1784
STRING:
 511145.b1784
COLOMBOS: yeaH


Product      
Name: DUF444 domain-containing protein YeaH
Synonym(s): YeaH
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 49.392
Isoelectric point: 7.249
Motif(s):
 
Type Positions Sequence
4 -> 421 FIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVTDVDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQGQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGVPANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAELRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNPAQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHLQSTFDNFAMQHIRDQDDIYPVFRELFHKQ

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Andres Leon E., et al., 2009
External database links:  
DIP:
 DIP-11787N
ECOCYC:
 G6970-MONOMER
ECOLIWIKI:
 b1784
INTERPRO:
 IPR006698
PANTHER:
 PTHR30510
PFAM:
 PF04285
PRIDE:
 P76235
REFSEQ:
 NP_416298
UNIPROT:
 P76235


Operon      
Name: yeaGH         
Operon arrangement:
Transcription unit        Promoter
yeaGH
yeaGH


Transcriptional Regulation      
Display Regulation             
Activated by: NtrC


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yeaIp6 1870243 forward nd [ICWHO] [2]
  promoter yeaIp5 1870364 forward nd [ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Andres Leon E., Ezkurdia I., Garcia B., Valencia A., Juan D., 2009, EcID. A database for the inference of functional interactions in E. coli., Nucleic Acids Res 37(Database issue):D629-35

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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