RegulonDB RegulonDB 10.8: Gene Form
   

yoaB gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yoaA yoaB yoaC CysB terminator yoaCp7 yoaCp7 yoaCp6 yoaCp6 TSS_2134 TSS_2134 yoaCp1 yoaCp1 yoaBp4 yoaBp4 TSS_2133 (cluster) TSS_2133 (cluster) TSS_2132 (cluster) TSS_2132 (cluster) TSS_2131 TSS_2131 yoaBp2 yoaBp2

Gene      
Name: yoaB    Texpresso search in the literature
Synonym(s): ECK1807, G6993, b1809
Genome position(nucleotides): 1893367 --> 1893711 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.59
External database links:  
ASAP:
ABE-0006020
ECHOBASE:
EB3287
OU-MICROARRAY:
b1809
PortEco:
yoaB
STRING:
511145.b1809
COLOMBOS: yoaB


Product      
Name: RutC family protein YoaB
Synonym(s): YoaB
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 12.493
Isoelectric point: 4.762
Motif(s):
 
Type Positions Sequence
4 -> 114 VRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0044010 - single-species biofilm formation
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Beloin C., et al., 2004
External database links:  
DIP:
DIP-47897N
ECOCYC:
G6993-MONOMER
ECOLIWIKI:
b1809
INTERPRO:
IPR006175
INTERPRO:
IPR019897
INTERPRO:
IPR035709
INTERPRO:
IPR035959
MODBASE:
P0AEB7
PANTHER:
PTHR47328:SF1
PFAM:
PF01042
PRIDE:
P0AEB7
PROSITE:
PS01094
REFSEQ:
NP_416323
SMR:
P0AEB7
UNIPROT:
P0AEB7


Operon      
Name: yoaB         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yoaBp2 1893321 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_2131 1893334 forward nd [RS-EPT-CBR] [3]
  promoter TSS_2132 (cluster) 1893336 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter TSS_2133 (cluster) 1893342 forward For this promoter, there
Read more >
[RS-EPT-CBR] [3]
  promoter yoaBp4 1893359 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_2134 1894098 forward nd [RS-EPT-CBR] [3]
  promoter yoaCp6 1894100 forward Similarity to the consensus
Read more >
[ICWHO], [RS-EPT-CBR] [2], [3]
  promoter yoaCp7 1894112 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Beloin C., Valle J., Latour-Lambert P., Faure P., Kzreminski M., Balestrino D., Haagensen JA., Molin S., Prensier G., Arbeille B., Ghigo JM., 2004, Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression., Mol Microbiol 51(3):659-74

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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