RegulonDB RegulonDB 10.8: Gene Form
   

yoaC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yoaB yoaC yoaH CysB pabBp7 pabBp7 yoaCp7 yoaCp7 yoaCp6 yoaCp6 TSS_2134 TSS_2134 yoaCp1 yoaCp1

Gene      
Name: yoaC    Texpresso search in the literature
Synonym(s): ECK1808, G6994, b1810
Genome position(nucleotides): 1894133 --> 1894432 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.67
External database links:  
ASAP:
 ABE-0006024
ECHOBASE:
 EB3288
OU-MICROARRAY:
 b1810
PortEco:
 yoaC
STRING:
 511145.b1810
COLOMBOS: yoaC


Product      
Name: DUF1889 domain-containing protein YoaC
Synonym(s): YoaC
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 10.835
Isoelectric point: 4.609
Motif(s):
 
Type Positions Sequence
1 -> 99 MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMETGERSVIKNPEYFSTYMQEELKALV

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G6994-MONOMER
ECOLIWIKI:
 b1810
INTERPRO:
 IPR037210
INTERPRO:
 IPR015079
PFAM:
 PF08986
PRIDE:
 P64490
REFSEQ:
 NP_416324
SMR:
 P64490
SWISSMODEL:
 P64490
UNIPROT:
 P64490


Operon      
Name: yoaC         
Operon arrangement:
Transcription unit        Promoter
yoaC


Transcriptional Regulation      
Display Regulation             
Activated by: CysB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2134 1894098 forward nd [RS-EPT-CBR] [1]
  promoter yoaCp6 1894100 forward Similarity to the consensus
Read more > 		[ICWHO], [RS-EPT-CBR] [1], [2]
  promoter yoaCp7 1894112 forward Similarity to the consensus
Read more > 		[ICWHO] [2]
  promoter pabBp7 1894628 forward Similarity to the consensus
Read more > 		[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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