RegulonDB

RegulonDB RegulonDB 10.8: Gene Form

yebV gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	yebV
Synonym(s):	ECK1835, G7009, b1836
Genome position(nucleotides):	1921780 --> 1922016 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	48.52
External database links:

ASAP:	ABE-0006110
ECHOBASE:	EB3778
OU-MICROARRAY:	b1836
PortEco:	yebV
STRING:	511145.b1836
COLOMBOS:	yebV

Product

Name:

DUF1480 domain-containing protein YebV

Synonym(s):

YebV

Sequence:

Get amino acid sequence Fasta Format

Molecular weight:

8.753

Isoelectric point:

4.253

Motif(s):

Type	Positions	Sequence
	2 -> 77	KTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAWDAETSIPALLNGEHSVLYRTRYDQQSDAWIMRL

Classification:

Multifun Terms (GenProtEC)
Gene Ontology Terms (GO)
Gene Ontology Terms (GO)	molecular_function	GO:0005515 - protein binding

Note(s):

Note(s): ...[more].

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

PRODOM:

REFSEQ:

UNIPROT:

Operon

Name:

yebV

Operon arrangement:

Transcription unit	Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB

	Type	Name	Post Left	Post Right	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
	promoter	yebVp2	1921715		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 2.19. P-value: 8.655e-7 Read more >	[ICWHO]	[1]
	promoter	yebVp6	1921725		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.123. P-value: 2.672e-5 Read more >	[ICWHO]	[1]
	promoter	yebVp1	1921745		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -2.8. P-value: 6.128e-5 Read more >	[ICWHO]	[1]
	promoter	yebVp5	1921753		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 4.066. P-value: 8.356e-5 Read more >	[ICWHO]	[1]
	promoter	yebWp3	1921957		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 2.98. P-value: 8.872e-5 Read more >	[ICWHO]	[1]
	promoter	yebWp6	1922084		forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.156. P-value: 3.607e-5 Read more >	[ICWHO]	[1]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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