RegulonDB RegulonDB 10.8: Gene Form
   

yedR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yedJ yedR rseX terminator rseXp rseXp TSS_2277 TSS_2277 yedJp4 yedJp4 yedJp3 yedJp3

Gene      
Name: yedR    Texpresso search in the literature
Synonym(s): ECK1961, G7051, b1963
Genome position(nucleotides): 2033119 <-- 2033484 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
External database links:  
ASAP:
ABE-0006514
ECHOBASE:
EB3795
OU-MICROARRAY:
b1963
PortEco:
yedR
STRING:
511145.b1963
COLOMBOS: yedR


Product      
Name: putative inner membrane protein
Synonym(s): YedR
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 13.838
Isoelectric point: 9.604
Motif(s):
 
Type Positions Sequence
38 -> 58 GGKLALWAFYTWCGYFVWAMA
86 -> 106 WLGALVGFLFMALVGALLGSI

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-11849N
ECOCYC:
G7051-MONOMER
ECOLIWIKI:
b1963
PRIDE:
P76334
REFSEQ:
NP_416472
UNIPROT:
P76334


Operon      
Name: yedRJ         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yedJp3 2033203 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yedJp4 2033223 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter TSS_2277 2033449 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB