RegulonDB RegulonDB 10.8: Gene Form
   

asnW gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yeeO yeeN asnW terminator asnUp asnUp TSS_2298 TSS_2298 yeeOp1 yeeOp1 yeeOp7 yeeOp7 TSS_2297 TSS_2297 TSS_2296 TSS_2296

Gene      
Name: asnW    Texpresso search in the literature
Synonym(s): ECK1979, G7069, b1984
Genome position(nucleotides): 2058027 <-- 2058102 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.63
External database links:  
ASAP:
ABE-0006584
ECHOBASE:
EB4283
OU-MICROARRAY:
b1984
PortEco:
asnW
COLOMBOS: asnW


Product      
Name: tRNA-Asn(GUU)
Synonym(s): tRNAasnW
Type: tRNAs
Cellular location: cytosol
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.2 - RNA related --> 2.2.5 - tRNA
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0030533 - triplet codon-amino acid adaptor activity
Note(s): Note(s): ...[more].
Evidence: [TAS] Traceable author statement
Reference(s): [1] Kimura-Harada F., et al., 1972
[2] Siekevitz P., et al., 1981
External database links:  
ECOCYC:
RNA0-304
ECOLIWIKI:
b1984


Operon      
Name: asnW         
Operon arrangement:
Transcription unit        Promoter
asnW


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2296 2059688 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_2297 2059690 reverse nd [RS-EPT-CBR] [3]
  promoter yeeOp7 2059722 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter yeeOp1 2059828 reverse Similarity to the consensus
Read more >
[ICWHO] [4]
  promoter TSS_2298 2059842 forward nd [RS-EPT-CBR] [3]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Kimura-Harada F., Harada F., Nishimura S., 1972, The presence of N-[9-(c-D-ribofuranosyl)purin-6-ylcarbamoyl] threonine in isoleucine, threonine and asparagine tRNAs from Escherichia coli., FEBS Lett 21(1):71-74

 [2] Siekevitz P., Zamecnik PC., 1981, Ribosomes and protein synthesis., J Cell Biol 91(3 Pt 2):53s-65s

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [4] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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