RegulonDB RegulonDB 10.7: Gene Form
   

gatZ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

gatZ gatY gatA TSS_2432 TSS_2432 TSS_2431 TSS_2431 TSS_2430 TSS_2430 TSS_2429 TSS_2429 TSS_2428 TSS_2428 TSS_2427 TSS_2427 TSS_2426 TSS_2426 TSS_2425 TSS_2425 TSS_2424 TSS_2424 TSS_2423 TSS_2423 TSS_2422 TSS_2422 TSS_2421 (cluster) TSS_2421 (cluster) gatZp gatZp TSS_2419 (cluster) TSS_2419 (cluster) TSS_2418 TSS_2418 TSS_2417 TSS_2417 TSS_2416 TSS_2416 TSS_2415 TSS_2415 TSS_2414 TSS_2414 TSS_2413 TSS_2413 TSS_2412 (cluster) TSS_2412 (cluster) TSS_2411 TSS_2411

Gene      
Name: gatZ    Texpresso search in the literature
Synonym(s): ECK2088, G7128, b2095
Genome position(nucleotides): 2175059 <-- 2176321 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.93
External database links:  
ASAP:
ABE-0006934
ECHOBASE:
EB2317
OU-MICROARRAY:
b2095
PORTECO:
gatZ
REGULONDB:
b2095
STRING:
511145.b2095
M3D: gatZ
COLOMBOS: gatZ
PortEco: b2095


Product      
Name: tagatose-1,6-bisphosphate aldolase 2 subunit GatZ
Synonym(s): GatZ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 47.109
Isoelectric point: 5.575
Motif(s):
 
Type Positions Sequence
1 -> 418 MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAAMEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQSGELSAIPHQLIMDKIYDVLRAYRYGC

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.1 - carbon utilization --> 1.1.1 - carbon compounds
Gene Ontology Terms (GO)  
cellular_component GO:0005887 - integral component of plasma membrane
molecular_function GO:0003824 - catalytic activity
biological_process GO:0005975 - carbohydrate metabolic process
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0019402 - galactitol metabolic process
GO:0019404 - galactitol catabolic process
GO:2001059 - D-tagatose 6-phosphate catabolic process
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48243N
ECOCYC:
G7128-MONOMER
ECOLIWIKI:
b2095
INTERPRO:
IPR013785
INTERPRO:
IPR012062
INTERPRO:
IPR023436
PFAM:
PF08013
PRIDE:
P0C8J8
PROTEINMODELPORTAL:
P0C8J8
REFSEQ:
NP_416598
SMR:
P0C8J8
SWISSMODEL:
P37191
UNIPROT:
P0C8J8


Operon      
Name: gatYZABCD         
Operon arrangement:
Transcription unit        Promoter
 
gatYZABCD


Transcriptional Regulation      
Display Regulation             
Activated by: CRP
Repressed by: ArcA, GatR


Regulation by small RNA    
  Display Regulation
small RNA gcvB, gcvB


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2411 2174704 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2412 (cluster) 2174716 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2413 2174721 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2414 2175103 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2415 2175270 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2416 2175336 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2417 2176110 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2418 2176118 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2419 (cluster) 2176382 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2421 (cluster) 2176636 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2422 2176657 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2423 2176773 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2424 2176779 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2425 2176864 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2426 2177023 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2427 2177046 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2428 2177069 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2429 2177071 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2430 2177123 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2431 2177200 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2432 2177204 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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