RegulonDB RegulonDB 10.8: Gene Form
   

arnF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

arnT menE arnF arnE pmrD menC pmrDp3 pmrDp3 pmrDp4 pmrDp4

Gene      
Name: arnF    Texpresso search in the literature
Synonym(s): ECK2252, G7171, b2258, yfbJ
Genome position(nucleotides): 2372892 --> 2373278 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
48.58
External database links:  
ASAP:
ABE-0007466
ECHOBASE:
EB3847
OU-MICROARRAY:
b2258
PortEco:
arnF
STRING:
511145.b2258
COLOMBOS: arnF


Product      
Name: undecaprenyl-phosphate-α-L-Ara4N flippase - ArnF subunit
Synonym(s): ArnF, YfbJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 14.085
Isoelectric point: 9.516
Motif(s):
 
Type Positions Sequence
36 -> 56 FIAALLAFGLDARILLLGLLG
101 -> 121 FSLKALLGVACIMSGLMLIFL
3 -> 23 LMWGLFSVIIASVAQLSLGFA
77 -> 97 YALLSMSYVLVWIASMVLPGW

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
GO:1901505 - carbohydrate derivative transmembrane transporter activity
biological_process GO:0006629 - lipid metabolic process
GO:0009103 - lipopolysaccharide biosynthetic process
GO:0009245 - lipid A biosynthetic process
GO:0055085 - transmembrane transport
GO:0010041 - response to iron(III) ion
GO:1901264 - carbohydrate derivative transport
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48225N
ECOCYC:
G7171-MONOMER
ECOLIWIKI:
b2258
INTERPRO:
IPR022832
INTERPRO:
IPR000390
PANTHER:
PTHR30561
PRIDE:
P76474
REFSEQ:
NP_416761
SMR:
P76474
UNIPROT:
P76474


Operon      
Name: arnBCADTEF         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter pmrDp4 2373566 reverse Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter pmrDp3 2373574 reverse Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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