RegulonDB

RegulonDB RegulonDB 10.8: Gene Form

yfbV gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

Gene
Name:	yfbV
Synonym(s):	ECK2289, G7189, b2295
Genome position(nucleotides):	2412677 <-- 2413132 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	50.88
External database links:

ASAP:	ABE-0007575
ECHOBASE:	EB3859
OU-MICROARRAY:	b2295
PortEco:	yfbV
STRING:	511145.b2295
COLOMBOS:	yfbV

Product

Name:

UPF0208 membrane protein YfbV

Synonym(s):

YfbV, protein involved in regulation of chromosome structure

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

17.213

Isoelectric point:

10.511

Motif(s):

Type	Positions	Sequence
	11 -> 149	FFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLD
	46 -> 65	YAIRFMPPIAVFTLCWQIAL
	69 -> 91	LGPAVATALFALSLPMQGLWWLG

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		3 - regulation --> 3.1 - type of regulation --> 3.1.1 - DNA structure level
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane
	biological_process	GO:2001251 - negative regulation of chromosome organization

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

yfbV

Operon arrangement:

Transcription unit	Promoter

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_2581	2412114	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2582 (cluster)	2412636	reverse	For this promoter, there is a cluster of 10 transcription start sites,in the interval 2412627 to 2412636, where the highest frequency is at position 2410652. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2583	2412645	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2584	2412647	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2585	2412788	reverse	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2586	2413305	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2587 (cluster)	2413344	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2413344 to 2413345, where the highest frequency is at position 2411366. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2588 (cluster)	2413425	forward	For this promoter, there is a cluster of 3 transcription start sites,in the interval 2413425 to 2413427, where the highest frequency is at position 2411449. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2589 (cluster)	2413437	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2413437 to 2413438, where the highest frequency is at position 2411459. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2590 (cluster)	2413451	forward	For this promoter, there is a cluster of 2 transcription start sites,in the interval 2413451 to 2413452, where the highest frequency is at position 2411473. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2591 (cluster)	2413455	forward	For this promoter, there is a cluster of 3 transcription start sites,in the interval 2413455 to 2413457, where the highest frequency is at position 2411478. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2592 (cluster)	2413462	forward	For this promoter, there is a cluster of 5 transcription start sites,in the interval 2413462 to 2413466, where the highest frequency is at position 2411487. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[1]
promoter	TSS_2593	2413470	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2594	2413474	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2595	2413477	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2596	2413482	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2597	2413792	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2598	2413797	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2599	2413805	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2600	2413957	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2601	2414269	forward	nd	[RS-EPT-CBR]	[1]
promoter	TSS_2602	2414360	forward	nd	[RS-EPT-CBR]	[1]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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