RegulonDB RegulonDB 10.8: Gene Form
   

yfcD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfcC yfcE yfcD TSS_2613 TSS_2613

Gene      
Name: yfcD    Texpresso search in the literature
Synonym(s): ECK2293, G7191, b2299
Genome position(nucleotides): 2418634 <-- 2419176 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.22
External database links:  
ASAP:
ABE-0007587
ECHOBASE:
EB3860
OU-MICROARRAY:
b2299
PortEco:
yfcD
STRING:
511145.b2299
COLOMBOS: yfcD


Product      
Name: putative Nudix hydrolase YfcD
Synonym(s): YfcD
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 20.376
Isoelectric point: 4.38
Motif(s):
 
Type Positions Sequence
35 -> 163 LRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALAL
36 -> 154 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFT
72 -> 94 GGVVQADEQLLESARREAEEELG

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0005515 - protein binding
GO:0016787 - hydrolase activity
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016817 - hydrolase activity, acting on acid anhydrides
GO:0046872 - metal ion binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-28086N
ECOCYC:
G7191-MONOMER
ECOLIWIKI:
b2299
INTERPRO:
IPR000086
INTERPRO:
IPR024195
INTERPRO:
IPR015797
MODBASE:
P65556
PDB:
2FKB
PFAM:
PF00293
PRIDE:
P65556
PROSITE:
PS51462
REFSEQ:
NP_416802
SMR:
P65556
SWISSMODEL:
P65556
UNIPROT:
P65556


Operon      
Name: yfcD         
Operon arrangement:
Transcription unit        Promoter
yfcD


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2613 2419186 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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