RegulonDB RegulonDB 10.8: Gene Form
   

yfcE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfcF yfcE yfcD TSS_2613 TSS_2613

Gene      
Name: yfcE    Texpresso search in the literature
Synonym(s): ECK2294, G7192, b2300
Genome position(nucleotides): 2419234 <-- 2419788 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.89
External database links:  
ASAP:
ABE-0007589
ECHOBASE:
EB3861
OU-MICROARRAY:
b2300
PortEco:
yfcE
STRING:
511145.b2300
COLOMBOS: yfcE


Product      
Name: phosphodiesterase YfcE
Synonym(s): YfcE
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 20.122
Isoelectric point: 6.008
Motif(s):
 
Type Positions Sequence
2 -> 162 MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGMLD

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
GO:0032991 - protein-containing complex
molecular_function GO:0016787 - hydrolase activity
GO:0046872 - metal ion binding
GO:0008081 - phosphoric diester hydrolase activity
GO:0030145 - manganese ion binding
GO:0042802 - identical protein binding
External database links:  
ECOCYC:
G7192-MONOMER
ECOLIWIKI:
b2300
INTERPRO:
IPR020935
INTERPRO:
IPR041802
INTERPRO:
IPR029052
INTERPRO:
IPR024654
INTERPRO:
IPR000979
MODBASE:
P67095
PANTHER:
PTHR11124
PDB:
1SU1
PFAM:
PF12850
PRIDE:
P67095
PROSITE:
PS01269
REFSEQ:
NP_416803
SMR:
P67095
UNIPROT:
P67095


Operon      
Name: yfcE         
Operon arrangement:
Transcription unit        Promoter
yfcE


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2613 2419186 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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