Gene
Name:	sixA
Synonym(s):	ECK2334, G7211, b2340, yfcW
Genome position(nucleotides):	2456327 <-- 2456812 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.29
External database links:

ASAP:	ABE-0007720
ECHOBASE:	EB3878
OU-MICROARRAY:	b2340
PortEco:	sixA
STRING:	511145.b2340
COLOMBOS:	sixA

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yfcVp9	2455654	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.41. P-value: 2.129e-6 Read more >	[ICWHO]	[3]
promoter	yfcVp7	2455668	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.273. P-value: 4.882e-6 Read more >	[ICWHO]	[3]
promoter	yfcVp8	2455688	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 5.345. P-value: 1.738e-5 Read more >	[ICWHO]	[3]
promoter	yfcVp6	2455821	reverse	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.968. P-value: 7.192e-5 Read more >	[ICWHO]	[3]
promoter	TSS_2652	2456916	reverse	nd	[RS-EPT-CBR]	[4]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Matsubara M., Mizuno T., 1999, EnvZ-independent phosphotransfer signaling pathway of the OmpR-mediated osmoregulatory expression of OmpC and OmpF in Escherichia coli., Biosci Biotechnol Biochem 63(2):408-14
[2] Matsubara M., Mizuno T., 2000, The SixA phospho-histidine phosphatase modulates the ArcB phosphorelay signal transduction in Escherichia coli., FEBS Lett 470(2):118-24
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[4] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.