RegulonDB RegulonDB 10.7: Gene Form
   

yfdF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fadL yfdF mlaA OmpR yfdFp8 yfdFp8 yfdFp7 yfdFp7 yfdFp9 yfdFp9 yfdFp4 yfdFp4

Gene      
Name: yfdF    Texpresso search in the literature
Synonym(s): ECK2339, G7215, b2345
Genome position(nucleotides): 2463012 --> 2464070 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
35.51
External database links:  
ASAP:
ABE-0007743
ECHOBASE:
EB3882
OU-MICROARRAY:
b2345
PORTECO:
yfdF
REGULONDB:
b2345
STRING:
511145.b2345
M3D: yfdF
COLOMBOS: yfdF
PortEco: b2345


Product      
Name: protein YfdF
Synonym(s): YfdF
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 40.249
Isoelectric point: 4.8
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7215-MONOMER
ECOLIWIKI:
b2345
PRIDE:
P76505
PROTEINMODELPORTAL:
P76505
REFSEQ:
NP_416847
SMR:
P76505
UNIPROT:
P76505


Operon      
Name: yfdF         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfdFp4 2462802 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yfdFp9 2462982 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yfdFp7 2462984 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yfdFp8 2462985 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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