RegulonDB RegulonDB 10.8: Gene Form
   

yfdC gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdC mlaA argW Fis argWp argWp mlaAp mlaAp

Gene      
Name: yfdC    Texpresso search in the literature
Synonym(s): ECK2341, G7217, b2347
Genome position(nucleotides): 2465301 --> 2466233 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.55
External database links:  
ASAP:
 ABE-0007751
ECHOBASE:
 EB2319
OU-MICROARRAY:
 b2347
PortEco:
 yfdC
STRING:
 511145.b2347
COLOMBOS: yfdC


Product      
Name: inner membrane protein YfdC
Synonym(s): YfdC
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 34.503
Isoelectric point: 5.067
Motif(s):
 
Type Positions Sequence
59 -> 81 LLWSAIAAGLSMGASLLAKGIFQ
213 -> 232 IVVIILMTWLIALGDTTHIV
91 -> 113 FLLENLGYTFGFIIVIMARQQLF
134 -> 156 GLLIRLWGVVLLGNILGTGIAAW
40 -> 276 IHEHIRQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEYMPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIILMTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0022857 - transmembrane transporter activity
GO:0015499 - formate transmembrane transporter activity
biological_process GO:0055085 - transmembrane transport
GO:0015724 - formate transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
 G7217-MONOMER
ECOLIWIKI:
 b2347
INTERPRO:
 IPR000292
INTERPRO:
 IPR023271
PANTHER:
 PTHR30520
PFAM:
 PF01226
PRIDE:
 P37327
REFSEQ:
 NP_416849
SMR:
 P37327
UNIPROT:
 P37327


Operon      
Name: yfdC         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

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