RegulonDB RegulonDB 10.7: Gene Form
   

yfdI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdI yfdH yfdG ryeG yodE terminator anti-terminator anti-anti-terminator TSS_2659 (cluster) TSS_2659 (cluster) TSS_2658 TSS_2658 TSS_2657 TSS_2657 TSS_2656 TSS_2656

Gene      
Name: yfdI    Texpresso search in the literature
Synonym(s): ECK2346, G7221, b2352, gtrIV, gtrS
Genome position(nucleotides): 2469131 --> 2470462 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
27.55
External database links:  
ASAP:
ABE-0007765
ECHOBASE:
EB3885
OU-MICROARRAY:
b2352
PORTECO:
yfdI
REGULONDB:
b2352
STRING:
511145.b2352
M3D: yfdI
COLOMBOS: yfdI
PortEco: b2352


Product      
Name: CPS-53 (KpLE1) prophage; serotype-specific glucosyl transferase YfdI
Synonym(s): GtrIV, GtrIVEC, GtrS, YfdI
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 51.484
Isoelectric point: 8.799
Motif(s):
 
Type Positions Sequence
7 -> 29 VSLYISFVLIICALSKNIMMLNT
179 -> 201 IISTAKNQFILTPLIVYSYYIFF
409 -> 431 LFGMYFSFDLCLYITVVFLIYKI
68 -> 87 YISSYSYILYTYVLFISIFT
206 -> 225 LIIKSVICVVCLLASIFAIS

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Adams MM., et al., 2001
External database links:  
ECOCYC:
G7221-MONOMER
ECOLIWIKI:
b2352
PRIDE:
P76507
PROTEINMODELPORTAL:
P76507
REFSEQ:
NP_416853
UNIPROT:
P76507


Operon      
Name: yfdGHI         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2656 2468210 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2657 2468808 forward nd [RS-EPT-CBR] [2]
  promoter TSS_2658 2470649 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2659 (cluster) 2470665 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Adams MM., Allison GE., Verma NK., 2001, Type IV O antigen modification genes in the genome of Shigella flexneri NCTC 8296., Microbiology 147(Pt 4):851-60

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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