RegulonDB RegulonDB 10.7: Gene Form
   

yfdP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdQ yfdO yfdP yfdN terminator anti-terminator anti-anti-terminator yfdPp9 yfdPp9 yfdPp6 yfdPp6 yfdPp5 yfdPp5

Gene      
Name: yfdP    Texpresso search in the literature
Synonym(s): ECK2353, G7228, b2359
Genome position(nucleotides): 2473604 --> 2473966 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.14
External database links:  
ASAP:
ABE-0007785
ECHOBASE:
EB3890
OU-MICROARRAY:
b2359
PORTECO:
yfdP
REGULONDB:
b2359
STRING:
511145.b2359
M3D: yfdP
COLOMBOS: yfdP
PortEco: b2359


Product      
Name: CPS-53 (KpLE1) prophage; protein YfdP
Synonym(s): YfdP
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 13.102
Isoelectric point: 5.792
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12004N
ECOCYC:
G7228-MONOMER
ECOLIWIKI:
b2359
PRIDE:
P76512
PROTEINMODELPORTAL:
P76512
REFSEQ:
NP_416860
UNIPROT:
P76512


Operon      
Name: yfdPQ         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfdPp5 2473422 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yfdPp6 2473536 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yfdPp9 2473572 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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