RegulonDB RegulonDB 10.7: Gene Form
   

yfdT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdR yfdS yfdT torI ypdJ terminator anti-terminator TSS_2662 (cluster) TSS_2662 (cluster)

Gene      
Name: yfdT    Texpresso search in the literature
Synonym(s): ECK2357, G7232, b2363
Genome position(nucleotides): 2475873 --> 2476178 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.81
External database links:  
ASAP:
ABE-0007795
ECHOBASE:
EB3894
ECOO157CYC:
Z3119
ECOO157CYC:
Z3371
ECOO157CYC:
Z1429
ECOO157CYC:
Z1781
OU-MICROARRAY:
b2363
PORTECO:
yfdT
REGULONDB:
b2363
STRING:
511145.b2363
M3D: yfdT
COLOMBOS: yfdT
PortEco: b2363


Product      
Name: CPS-53 (KpLE1) prophage; protein YfdT
Synonym(s): YfdT
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 12.133
Isoelectric point: 4.673
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7232-MONOMER
ECOLIWIKI:
b2363
ECOO157CYC:
Z3371-MONOMER
ECOO157CYC:
Z3119-MONOMER
ECOO157CYC:
Z1429-MONOMER
ECOO157CYC:
Z1781-MONOMER
PRIDE:
P76516
PROTEINMODELPORTAL:
P76516
REFSEQ:
NP_416864
UNIPROT:
P76516


Operon      
Name: yfdRST         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2662 (cluster) 2476376 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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