RegulonDB RegulonDB 10.7: Gene Form
   

yfdX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

frc yfdX ypdI EvgA EvgA EvgA ypdIp1 ypdIp1 yfdXp yfdXp frcp frcp oxcp11 oxcp11 oxcp10 oxcp10

Gene      
Name: yfdX    Texpresso search in the literature
Synonym(s): ECK2371, G7238, b2375
Genome position(nucleotides): 2493767 <-- 2494402 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.23
External database links:  
ASAP:
ABE-0007835
ECHOBASE:
EB3898
OU-MICROARRAY:
b2375
PORTECO:
yfdX
REGULONDB:
b2375
STRING:
511145.b2375
M3D: yfdX
COLOMBOS: yfdX
PortEco: b2375


Product      
Name: protein YfdX
Synonym(s): YfdX
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 22.977
Isoelectric point: 5.13
Motif(s):
 
Type Positions Sequence
1 -> 21 MKRLIMATMVTAILASSTVWA
56 -> 206 AMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSE
22 -> 211 ADNAPVAAQQQTQQVQQTQKTAAAAERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
Note(s): Note(s): ...[more].
Reference(s): [1] Paradis-Bleau C., et al., 2014
External database links:  
ECOCYC:
G7238-MONOMER
ECOLIWIKI:
b2375
INTERPRO:
IPR021236
PFAM:
PF10938
PRIDE:
P76520
PROTEINMODELPORTAL:
P76520
REFSEQ:
NP_416876
SMR:
P76520
UNIPROT:
P76520


Operon      
Name: yfdX-frc-oxc-yfdVE         
Operon arrangement:
Transcription unit        Promoter
frc
yfdX
 


Transcriptional Regulation      
Display Regulation             
Activated by: EvgA


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter oxcp10 2492130 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter oxcp11 2492144 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ypdIp1 2494494 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Paradis-Bleau C., Kritikos G., Orlova K., Typas A., Bernhardt TG., 2014, A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism., PLoS Genet 10(1):e1004056

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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