RegulonDB

Gene
Name:	ypdC
Synonym(s):	ECK2378, G7245, b2382
Genome position(nucleotides):	2501130 --> 2501987 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	53.61
External database links:

ASAP:	ABE-0007859
ECHOBASE:	EB3902
OU-MICROARRAY:	b2382
PORTECO:	ypdC
REGULONDB:	b2382
STRING:	511145.b2382
M3D:	ypdC
COLOMBOS:	ypdC
PortEco:	b2382

Product

Name:

putative AraC-type DNA-binding transcriptional regulator YpdC

Synonym(s):

YpdC

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

cytosol

Molecular weight:

32.355

Isoelectric point:

9.428

Motif(s):

Type	Positions	Sequence
	201 -> 222	ESVAQFFNITPNHLSKLFAQHG
	184 -> 282	HSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSAR
	204 -> 281	AQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSA
	249 -> 272	IHEVAQRCGFPDSDYFCRVFRRQF

Classification:

Multifun Terms (GenProtEC)
		2 - information transfer --> 2.2 - RNA related --> 2.2.2 - Transcription related
		3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level --> 3.1.2.2 - activator
Gene Ontology Terms (GO)
	cellular_component	GO:0005829 - cytosol
	molecular_function	GO:0003677 - DNA binding GO:0003700 - DNA-binding transcription factor activity GO:0043565 - sequence-specific DNA binding
	biological_process	GO:0006355 - regulation of transcription, DNA-templated

Note(s):

Note(s): ...[more].

Evidence:

[AIFS] Automated inference of function from sequence
[HIFS] Human inference of function from sequence

Reference(s):

[1] Fried L., et al., 2013
[2] Perez-Rueda E., et al., 2000
[3] Perez-Rueda E., et al., 2004

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

INTERPRO:

INTERPRO:

MODBASE:

PFAM:

PRIDE:

PRINTS:

PROSITE:

PROSITE:

PROTEINMODELPORTAL:

REFSEQ:

SMART:

SMR:

UNIPROT:

Reference(s)
[1] Fried L., Behr S., Jung K., 2013, Identification of a Target Gene and Activating Stimulus for the YpdA/YpdB Histidine Kinase/Response Regulator System in Escherichia coli., J Bacteriol 195(4):807-15
[2] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47
[3] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50