RegulonDB RegulonDB 10.8: Gene Form
   

yfeO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfeO glk ypeC Cra anti-terminator terminator TSS_2676 TSS_2676 TSS_2675 (cluster) TSS_2675 (cluster) glkp glkp TSS_2674 TSS_2674 yfeOp1 yfeOp1 glkp1 glkp1 TSS_2672 TSS_2672

Gene      
Name: yfeO    Texpresso search in the literature
Synonym(s): ECK2385, G7251, b2389
Genome position(nucleotides): 2509630 --> 2510886 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.86
External database links:  
ASAP:
 ABE-0007880
ECHOBASE:
 EB3908
OU-MICROARRAY:
 b2389
PortEco:
 yfeO
STRING:
 511145.b2389
COLOMBOS: yfeO


Product      
Name: putative transport protein YfeO
Synonym(s): YfeO
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 43.574
Isoelectric point: 9.019
Motif(s):
 
Type Positions Sequence
147 -> 169 WTILASAGTIGALFGTPVAAALI
301 -> 323 YFLLAVIKLAALVVAAASGFRGG
9 -> 31 MLLLSLPAVAIGIASSLILIVVM
55 -> 77 SPLWIIGVLTLTGIAVGLVIRFS
223 -> 244 ILSGAIVAAIAIAAGMVAVWCL

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0005216 - ion channel activity
GO:0005247 - voltage-gated chloride channel activity
biological_process GO:0006811 - ion transport
GO:0006821 - chloride transport
GO:0034220 - ion transmembrane transport
GO:0055085 - transmembrane transport
GO:1902476 - chloride transmembrane transport
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G7251-MONOMER
ECOLIWIKI:
 b2389
INTERPRO:
 IPR014743
INTERPRO:
 IPR001807
INTERPRO:
 IPR022969
MODBASE:
 P67729
PFAM:
 PF00654
PRIDE:
 P67729
PRINTS:
 PR00762
REFSEQ:
 NP_416890
SMR:
 P67729
UNIPROT:
 P67729


Operon      
Name: yfeO         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2672 2509416 reverse nd [RS-EPT-CBR] [1]
  promoter yfeOp1 2509453 forward Similarity to the consensus
Read more > 		[ICWHO] [2]
  promoter TSS_2674 2509460 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2675 (cluster) 2509463 reverse For this promoter, there
Read more > 		[RS-EPT-CBR] [1]
  promoter TSS_2676 2509538 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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