RegulonDB RegulonDB 10.8: Gene Form
   

yffO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yffP yffO yffQ yffN terminator anti-terminator anti-anti-terminator yffQp3 yffQp3 yffQp1 yffQp1 yffOp1 yffOp1 yffOp yffOp yffOp7 yffOp7 yffOp8 yffOp8

Gene      
Name: yffO    Texpresso search in the literature
Synonym(s): ECK2441, G7276, b2446
Genome position(nucleotides): 2562111 --> 2562527 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 48.92
External database links:  
ASAP:
 ABE-0008066
ECHOBASE:
 EB3928
OU-MICROARRAY:
 b2446
PortEco:
 yffO
STRING:
 511145.b2446
COLOMBOS: yffO


Product      
Name: CPZ-55 prophage; uncharacterized protein YffO
Synonym(s): YffO
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 15.729
Isoelectric point: 7.6
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 G7276-MONOMER
ECOLIWIKI:
 b2446
INTERPRO:
 IPR017956
PRIDE:
 P76546
REFSEQ:
 NP_416941
SMART:
 SM00384
SMR:
 P76546
UNIPROT:
 P76546


Operon      
Name: yffOP         
Operon arrangement:
Transcription unit        Promoter
yffO-yffP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yffOp8 2561902 forward Similarity to the consensus
Read more > 		[ICWHO] [1]
  promoter yffOp7 2561993 forward Similarity to the consensus
Read more > 		[ICWHO] [1]
  promoter yffOp1 2562080 forward Similarity to the consensus
Read more > 		[ICWHO] [1]
  promoter yffQp1 2563389 forward Similarity to the consensus
Read more > 		[ICWHO] [1]
  promoter yffQp3 2563409 forward Similarity to the consensus
Read more > 		[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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