RegulonDB RegulonDB 10.8: Gene Form
   

yffQ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yffP yffR yffQ yffO terminator anti-terminator anti-anti-terminator yffQp3 yffQp3 yffQp1 yffQp1

Gene      
Name: yffQ    Texpresso search in the literature
Synonym(s): ECK2443, G7278, b2448
Genome position(nucleotides): 2563592 --> 2563969 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
43.12
External database links:  
ASAP:
ABE-0008072
ECHOBASE:
EB3930
OU-MICROARRAY:
b2448
PortEco:
yffQ
STRING:
511145.b2448
COLOMBOS: yffQ


Product      
Name: CPZ-55 prophage; uncharacterized protein YffQ
Synonym(s): YffQ
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 13.819
Isoelectric point: 4.584
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7278-MONOMER
ECOLIWIKI:
b2448
PRIDE:
P76548
REFSEQ:
NP_416943
UNIPROT:
P76548


Operon      
Name: yffQR         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yffQp1 2563389 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yffQp3 2563409 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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