RegulonDB RegulonDB 10.8: Gene Form
   

ypfG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

tktB ypfG nudK terminator TSS_2755 TSS_2755 TSS_2754 TSS_2754 TSS_2753 TSS_2753 TSS_2752 (cluster) TSS_2752 (cluster) ypfGp3 ypfGp3 ypfGp4 ypfGp4 TSS_2751 TSS_2751

Gene      
Name: ypfG    Texpresso search in the literature
Synonym(s): ECK2461, G7295, b2466
Genome position(nucleotides): 2581734 <-- 2582777 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.6
External database links:  
ASAP:
ABE-0008120
ECHOBASE:
EB3946
OU-MICROARRAY:
b2466
PortEco:
ypfG
STRING:
511145.b2466
COLOMBOS: ypfG


Product      
Name: DUF1176 domain-containing protein YpfG
Synonym(s): YpfG
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 38.746
Isoelectric point: 7.307
Motif(s):
 
Type Positions Sequence
25 -> 347 QRAFSDWQVTCNNQNFCVARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDKWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGSETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWPTLWITR
1 -> 21 MRYRIFLLFFFALLPTSLVWA
22 -> 347 APAQRAFSDWQVTCNNQNFCVARNTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDKWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVGSETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSLDPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNWHGPDAWPTLWITR

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7295-MONOMER
ECOLIWIKI:
b2466
INTERPRO:
IPR009560
PFAM:
PF06674
PRIDE:
P76559
REFSEQ:
NP_416961
SMR:
P76559
UNIPROT:
P76559


Operon      
Name: ypfG         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2751 2582813 reverse nd [RS-EPT-CBR] [1]
  promoter ypfGp4 2582880 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ypfGp3 2582893 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_2752 (cluster) 2582912 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2753 2582914 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2754 2582916 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2755 2582930 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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