RegulonDB RegulonDB 10.7: Gene Form
   

yphD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yphE yphC yphD yphBp2 yphBp2 yphBp3 yphBp3

Gene      
Name: yphD    Texpresso search in the literature
Synonym(s): ECK2543, G7340, b2546
Genome position(nucleotides): 2675827 <-- 2676825 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
56.16
External database links:  
ASAP:
ABE-0008373
ECHOBASE:
EB3238
OU-MICROARRAY:
b2546
PORTECO:
yphD
REGULONDB:
b2546
STRING:
511145.b2546
M3D: yphD
COLOMBOS: yphD
PortEco: b2546


Product      
Name: putative ABC transporter membrane subunit YphD
Synonym(s): YphD
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 34.483
Isoelectric point: 10.906
Motif(s):
 
Type Positions Sequence
84 -> 104 GPMVAFVSVCLAFLLQFEVPL
105 -> 125 AVACLLVLLLGALMGTLAGVL
28 -> 48 GLLVVIAILYLVFSLNAPGFI
63 -> 83 IGIAAWAMTLIIISGEIDVSV
222 -> 242 VRILIFTLSGLLAAVTGILLA

 

Classification:
Multifun Terms (GenProtEC)  
  6 - cell structure --> 6.1 - membrane
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.m - ABC superfamily, membrane component
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0043190 - ATP-binding cassette (ABC) transporter complex
molecular_function GO:0022857 - transmembrane transporter activity
biological_process GO:0006810 - transport
GO:0055085 - transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
YPHD-MONOMER
ECOLIWIKI:
b2546
INTERPRO:
IPR001851
PFAM:
PF02653
PRIDE:
P77315
PROTEINMODELPORTAL:
P77315
REFSEQ:
NP_417041
SMR:
P77315
UNIPROT:
P77315


Operon      
Name: yphFED         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yphBp3 2674788 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yphBp2 2674795 reverse Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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