RegulonDB RegulonDB 10.8: Gene Form
   

yphF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yphG yphE yphF anti-anti-terminator anti-terminator terminator

Gene      
Name: yphF    Texpresso search in the literature
Synonym(s): ECK2545, G7342, b2548
Genome position(nucleotides): 2678384 <-- 2679367 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 46.14
External database links:  
ASAP:
 ABE-0008378
ECHOBASE:
 EB3240
OU-MICROARRAY:
 b2548
PortEco:
 yphF
STRING:
 511145.b2548
COLOMBOS: yphF


Product      
Name: putative ABC transporter periplasmic binding protein YphF
Synonym(s): YphF
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 35.058
Isoelectric point: 6.097
Motif(s):
 
Type Positions Sequence
27 -> 327 AEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP
40 -> 294 TQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINK
1 -> 26 MPTKMRTTRNLLLMATLLGSALFARA

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.3 - Primary Active Transporters --> 4.3.A - Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters --> 4.3.A.1 - The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases --> 4.3.A.1.p - ABC superfamily, periplasmic binding component
Gene Ontology Terms (GO)  
cellular_component GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
molecular_function GO:0030246 - carbohydrate binding
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
 G7342-MONOMER
ECOLIWIKI:
 b2548
INTERPRO:
 IPR025997
INTERPRO:
 IPR028082
MODBASE:
 P77269
PFAM:
 PF13407
PRIDE:
 P77269
REFSEQ:
 NP_417043
SMR:
 P77269
UNIPROT:
 P77269


Operon      
Name: yphFED         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

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