RegulonDB RegulonDB 10.7: Gene Form
   

yphH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yphG glyA yphH anti-anti-terminator anti-terminator terminator TSS_2842 TSS_2842 TSS_2841 TSS_2841 TSS_2840 TSS_2840 TSS_2839 TSS_2839 TSS_2838 TSS_2838 TSS_2837 TSS_2837 TSS_2836 (cluster) TSS_2836 (cluster)

Gene      
Name: yphH    Texpresso search in the literature
Synonym(s): ECK2547, G7344, b2550
Genome position(nucleotides): 2682863 --> 2684056 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.59
External database links:  
ASAP:
ABE-0008384
ECHOBASE:
EB3242
OU-MICROARRAY:
b2550
PORTECO:
yphH
REGULONDB:
b2550
STRING:
511145.b2550
M3D: yphH
COLOMBOS: yphH
PortEco: b2550


Product      
Name: putative DNA-binding transcriptional regulator, NAGC-like
Synonym(s): YphH
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 44.521
Isoelectric point: 6.504
Motif(s):
 
Type Positions Sequence
116 -> 337 PTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR

 

Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.2 - transcriptional level
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
biological_process GO:0006355 - regulation of transcription, DNA-templated
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12833N
ECOCYC:
G7344-MONOMER
ECOLIWIKI:
b2550
INTERPRO:
IPR000600
INTERPRO:
IPR036390
INTERPRO:
IPR036388
MINT:
MINT-1238797
MODBASE:
P76586
PANTHER:
PTHR18964
PFAM:
PF00480
PRIDE:
P76586
PROSITE:
PS01125
PROTEINMODELPORTAL:
P76586
REFSEQ:
NP_417045
SMR:
P76586
UNIPROT:
P76586


Operon      
Name: yphH         
Operon arrangement:
Transcription unit        Promoter
yphH


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2836 (cluster) 2684844 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2837 2684848 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2838 2684852 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2839 2684858 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2840 2684978 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2841 2685334 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2842 2685346 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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