RegulonDB RegulonDB 10.8: Gene Form
   

ypjD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

Gene      
Name: ypjD    Texpresso search in the literature
Synonym(s): ECK2608, G7355, b2611
Genome position(nucleotides): 2747962 --> 2748753 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.65
External database links:  
ASAP:
ABE-0008591
ECHOBASE:
EB3978
OU-MICROARRAY:
b2611
PortEco:
ypjD
STRING:
511145.b2611
COLOMBOS: ypjD


Product      
Name: cytochrome c assembly family protein
Synonym(s): YpjD
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 29.262
Isoelectric point: 9.311
Motif(s):
 
Type Positions Sequence
37 -> 261 SAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQL
182 -> 201 IGVVLLTLTLCTGLFYMHNL
90 -> 109 WLLLPIVYAFALINLALATF
4 -> 23 FALLALVAYSVSLALIVPGL
124 -> 146 MLVHIGLSLFSYATLIIAALYAL

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0020037 - heme binding
biological_process GO:0017004 - cytochrome complex assembly
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7355-MONOMER
ECOLIWIKI:
b2611
INTERPRO:
IPR002541
PFAM:
PF01578
PRIDE:
P64432
REFSEQ:
NP_417102
UNIPROT:
P64432


Operon      
Name: ypjD         
Operon arrangement:
Transcription unit        Promoter
 


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2956 2746694 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2957 2747250 reverse nd [RS-EPT-CBR] [1]
  promoter ypjDp4 2747846 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter ypjDp5 2747930 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_2959 2747931 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2960 (cluster) 2748357 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2961 2748644 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2962 2749213 forward nd [RS-EPT-CBR] [1]



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