RegulonDB RegulonDB 10.7: Gene Form
   

yfjH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

intA yfjH alpA anti-anti-terminator anti-terminator terminator yfjIp9 yfjIp9 yfjHp2 yfjHp2 yfjHp3 yfjHp3 TSS_2972 TSS_2972

Gene      
Name: yfjH    Texpresso search in the literature
Synonym(s): ECK2619, G7359, b2623
Genome position(nucleotides): 2757644 <-- 2758600 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
36.78
External database links:  
ASAP:
ABE-0008632
ECHOBASE:
EB2986
OU-MICROARRAY:
b2623
PORTECO:
yfjH
REGULONDB:
b2623
STRING:
511145.b2623
M3D: yfjH
COLOMBOS: yfjH
PortEco: b2623


Product      
Name: CP4-57 prophage; uncharacterized protein YfjH
Synonym(s): YfjH
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 37.139
Isoelectric point: 7.468
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7359-MONOMER
ECOLIWIKI:
b2623
PRIDE:
P52123
PROTEINMODELPORTAL:
P52123
REFSEQ:
NP_417112
UNIPROT:
P52123


Operon      
Name: yfjH         
Operon arrangement:
Transcription unit        Promoter
yfjH


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2972 2758658 reverse nd [RS-EPT-CBR] [1]
  promoter yfjHp3 2758660 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjHp2 2758663 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjIp9 2758855 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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