RegulonDB RegulonDB 10.7: Gene Form
   

yfjI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfjI yfjJ alpA anti-anti-terminator anti-terminator terminator yfjJp6 yfjJp6 yfjIp3 yfjIp3 yfjIp10 yfjIp10 yfjIp8 yfjIp8 yfjIp9 yfjIp9 yfjHp2 yfjHp2 yfjHp3 yfjHp3 TSS_2972 TSS_2972

Gene      
Name: yfjI    Texpresso search in the literature
Synonym(s): ECK2621, G7360, b2625
Genome position(nucleotides): 2758985 --> 2760394 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
37.94
External database links:  
ASAP:
ABE-0008643
ECHOBASE:
EB2987
OU-MICROARRAY:
b2625
PORTECO:
yfjI
REGULONDB:
b2625
STRING:
511145.b2625
M3D: yfjI
COLOMBOS: yfjI
PortEco: b2625


Product      
Name: CP4-57 prophage; protein YfjI
Synonym(s): YfjI
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 54.027
Isoelectric point: 8.77
Motif(s):
 
Type Positions Sequence
28 -> 388 QAPQGLIAASALGVISLACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDLTAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFNDATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEKLIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFSNEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFS

 

Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7360-MONOMER
ECOLIWIKI:
b2625
INTERPRO:
IPR025048
PFAM:
PF13148
PRIDE:
P52124
PROTEINMODELPORTAL:
P52124
REFSEQ:
NP_417114
SMR:
P52124
UNIPROT:
P52124


Operon      
Name: yfjI         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2972 2758658 reverse nd [RS-EPT-CBR] [1]
  promoter yfjHp3 2758660 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjHp2 2758663 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjIp9 2758855 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjIp8 2758881 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjIp10 2758928 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjIp3 2758978 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yfjJp6 2760507 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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