RegulonDB RegulonDB 11.0: Gene Form
   

yfjI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfjI yfjJ alpA anti-anti-terminator anti-terminator terminator yfjJp6 yfjJp6 yfjIp3 yfjIp3 yfjIp10 yfjIp10 yfjIp8 yfjIp8 yfjIp9 yfjIp9 yfjHp2 yfjHp2 yfjHp3 yfjHp3 TSS_2972 TSS_2972

Gene      
Name: yfjI    Texpresso search in the literature
Synonym(s): ECK2621, G7360, b2625
Genome position(nucleotides): 2758985 --> 2760394
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 37.94
External database links:  
ASAP:
 ABE-0008643
ECHOBASE:
 EB2987
ECOLIHUB:
 yfjI
OU-MICROARRAY:
 b2625
STRING:
 511145.b2625
COLOMBOS: yfjI


Product      
Name: CP4-57 prophage; DUF3987 domain-containing protein YfjI
Synonym(s): YfjI
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 54.027
Isoelectric point: 8.77
Motif(s):
 
Type Positions Sequence Comment
28 -> 388 QAPQGLIAASALGVISLACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDLTAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFNDATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEKLIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFSNEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLYDFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFS

 
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P52124
ECOCYC:
 G7360-MONOMER
ECOLIWIKI:
 b2625
INTERPRO:
 IPR025048
PFAM:
 PF13148
PRIDE:
 P52124
REFSEQ:
 NP_417114
SMR:
 P52124
UNIPROT:
 P52124


Operon      
Name: yfjI         
Operon arrangement:
Transcription unit        Promoter
yfjI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2972 2758658 reverse nd [RS-EPT-CBR] [1]
  promoter yfjHp3 2758660 reverse nd [ICWHO] [2]
  promoter yfjHp2 2758663 reverse nd [ICWHO] [2]
  promoter yfjIp9 2758855 forward nd [ICWHO] [2]
  promoter yfjIp8 2758881 forward nd [ICWHO] [2]
  promoter yfjIp10 2758928 forward nd [ICWHO] [2]
  promoter yfjIp3 2758978 forward nd [ICWHO] [2]
  promoter yfjJp6 2760507 forward nd [ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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