RegulonDB RegulonDB 10.8: Gene Form
   

pinH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ypjA ypjB pinH ypjAp8 ypjAp8 TSS_2985 TSS_2985 TSS_2984 TSS_2984

Gene      
Name: pinH    Texpresso search in the literature
Synonym(s): ECK2645, G7383, b2648, ypjG
Type: Pseudo Gene
Genome position(nucleotides): 2783065 <-- 2783304 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.58
Note(s): No information about this gene was found by a literature search conducted on September 21, 2016.
External database links:  
ASAP:
 ABE-0008721
ECHOBASE:
 EB4057
OU-MICROARRAY:
 b2648
PortEco:
 pinH
COLOMBOS: pinH


Product      
Name: putative invertase fragment
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 10.496
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
External database links:  
ECOCYC:
 G7383-MONOMER
ECOLIWIKI:
 b2648
INTERPRO:
 IPR006119
MODBASE:
 P76611
PRIDE:
 P76611
PROSITE:
 PS51736
REFSEQ:
 NP_417135
SMR:
 P76611
UNIPROT:
 P76611


Operon      
Name: pinH         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2984 2778839 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2985 2779236 reverse nd [RS-EPT-CBR] [1]
  promoter ypjAp8 2782822 reverse Similarity to the consensus
Read more > 		[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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