RegulonDB RegulonDB 10.7: Gene Form
   

ygbN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygbN rpoS ygbM TSS_3030 TSS_3030 TSS_3029 TSS_3029 TSS_3028 TSS_3028 TSS_3027 TSS_3027 TSS_3026 TSS_3026 ygbNp2 ygbNp2

Gene      
Name: ygbN    Texpresso search in the literature
Synonym(s): ECK2735, G7421, b2740
Genome position(nucleotides): 2865101 --> 2866465 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.72
External database links:  
ASAP:
ABE-0008999
ECHOBASE:
EB2911
OU-MICROARRAY:
b2740
PORTECO:
ygbN
REGULONDB:
b2740
STRING:
511145.b2740
M3D: ygbN
COLOMBOS: ygbN
PortEco: b2740


Product      
Name: putative transporter YgbN
Synonym(s): YgbN
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 46.77
Isoelectric point: 9.428
Motif(s):
 
Type Positions Sequence
138 -> 158 ISPLKFGLPVAGIMLTVHVAV
28 -> 48 PFVALLLVSLLVALAAGIPAG
342 -> 362 NMLQMIDLPLLPAAFIISLAL
2 -> 22 STITLLCIALAGVIMLLLLVI
109 -> 129 AFFLGIPVFFDVGFIILAPII

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.2 - Electrochemical potential driven transporters --> 4.2.A - Porters (Uni-, Sym- and Antiporters)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0015128 - gluconate transmembrane transporter activity
biological_process GO:0035429 - gluconate transmembrane transport
Note(s): Note(s): ...[more].
Reference(s): [1] Jindal S., et al., 2019
External database links:  
ECOCYC:
B2740-MONOMER
ECOLIWIKI:
b2740
INTERPRO:
IPR003474
PANTHER:
PTHR30354
PFAM:
PF02447
PRIDE:
Q46892
PROTEINMODELPORTAL:
Q46892
REFSEQ:
NP_417220
UNIPROT:
Q46892


Operon      
Name: ygbN         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ygbNp2 2864907 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_3026 2866797 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3027 2867113 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3028 2867456 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3029 2867493 reverse nd [RS-EPT-CBR] [3]
  promoter TSS_3030 2867551 reverse nd [RS-EPT-CBR] [3]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Jindal S., Yang L., Day PJ., Kell DB., 2019, Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli., BMC Microbiol 19(1):195

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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