RegulonDB RegulonDB 10.8: Gene Form
   

ygcO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygcN ygcP queD ygcO terminator ygcNp3 ygcNp3

Gene      
Name: ygcO    Texpresso search in the literature
Synonym(s): ECK2762, G7433, b2767
Genome position(nucleotides): 2893919 --> 2894179 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.17
External database links:  
ASAP:
ABE-0009072
ECHOBASE:
EB2923
OU-MICROARRAY:
b2767
PortEco:
ygcO
STRING:
511145.b2767
COLOMBOS: ygcO


Product      
Name: putative 4Fe-4S cluster-containing protein
Synonym(s): YgcO
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 9.662
Isoelectric point: 7.088
Motif(s):
 
Type Positions Sequence
45 -> 74 GNLRIDYRSCLECGTCRLLCDESTLQQWRY

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0046872 - metal ion binding
GO:0051536 - iron-sulfur cluster binding
GO:0005506 - iron ion binding
biological_process GO:0009294 - DNA mediated transformation
GO:0055114 - oxidation-reduction process
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7433-MONOMER
ECOLIWIKI:
b2767
INTERPRO:
IPR012206
INTERPRO:
IPR017896
PANTHER:
PTHR43082
PRIDE:
Q46905
PROSITE:
PS51379
REFSEQ:
NP_417247
SMR:
Q46905
UNIPROT:
Q46905


Operon      
Name: ygcNOP         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ygcNp3 2892572 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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