RegulonDB RegulonDB 10.8: Gene Form
   

ygeK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insCD4 insD4 ygeN pbl ygeK ygeO insC4 ygeI ygeL terminator terminator

Gene      
Name: ygeK    Texpresso search in the literature
Synonym(s): ECK2853, G7475, b2855
Type: Pseudo Gene
Genome position(nucleotides): 2994460 <-- 2994903 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
35.59
External database links:  
ASAP:
ABE-0009379
ECHOBASE:
EB2856
OU-MICROARRAY:
b2855
PortEco:
ygeK
STRING:
316407.85675670
COLOMBOS: ygeK


Product      
Name: putative DNA-binding transcriptional regulator YgeK
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 9.458
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0006351 - transcription, DNA-templated
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
Reference(s): [1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004
External database links:  
ECOCYC:
G7475-MONOMER
ECOLIWIKI:
b2855
INTERPRO:
IPR011006
INTERPRO:
IPR016032
INTERPRO:
IPR011991
INTERPRO:
IPR001789
INTERPRO:
IPR000792
PFAM:
PF00196
PFAM:
PF00072
PRINTS:
PR00038
PROSITE:
PS00622
PROSITE:
PS50110
PROSITE:
PS50043
REFSEQ:
NP_417332
SMART:
SM00421
UNIPROT:
Q46791


Operon      
Name: ygeLK         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47

 [2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50


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