RegulonDB RegulonDB 10.8: Gene Form
   

ygeP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygeQ insC4 insCD4 ygeP insD4 TSS_3142 (cluster) TSS_3142 (cluster)

Gene      
Name: ygeP    Texpresso search in the literature
Synonym(s): ECK2858, G7482, b2862
Type: Pseudo Gene
Genome position(nucleotides): 2997689 <-- 2997988 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
38.33
External database links:  
ASAP:
ABE-0009399
ECHOBASE:
EB2858
ECOO157CYC:
Z4200
OU-MICROARRAY:
b2862
PortEco:
ygeP
STRING:
316407.85675676
COLOMBOS: ygeP


Product      
Name: protein YgeP
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 6.532
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12154N
ECOCYC:
G7482-MONOMER
ECOLIWIKI:
b2862
ECOO157CYC:
Z4200-MONOMER
PRIDE:
Q46796
REFSEQ:
NP_417339
UNIPROT:
Q46796


Operon      
Name: ygeP         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3142 (cluster) 2997629 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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