RegulonDB RegulonDB 11.1: Gene Form
   

agaD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

agaC agaD agaI agaB

Gene      
Name: agaD    Texpresso search in the literature
Synonym(s): ECK3128, G7635, b3140, yraF
Genome position(nucleotides): 3285478 --> 3286269
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.37
External database links:  
ASAP:
 ABE-0010314
ECHOBASE:
 EB2624
ECOLIHUB:
 agaD
OU-MICROARRAY:
 b3140
STRING:
 511145.b3140
COLOMBOS: agaD


Product      
Name: galactosamine-specific PTS enzyme IID component
Synonym(s): AgaD, YraF
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 29.001
Isoelectric point: 9.663
Motif(s):
 
Type Positions Sequence Comment
3 -> 263 SEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATILGITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL UniProt: PTS EIID.
5 -> 263 ISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATILGITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL
61 -> 81 LEFINTHPNLVGFLMGLLISM UniProt: Helical.
98 -> 118 LFGPIAGIGDAIFWFTLLPIM UniProt: Helical.
131 -> 151 LLGPILFFAVYLLIFFLRVGW UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.4 - Group Translocators --> 4.4.A - Phosphotransferase Systems (PEP-dependent PTS)
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
biological_process GO:0008643 - carbohydrate transport
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system
Note(s): Note(s): ...[more].
Reference(s): [1] Reizer J., et al., 1996
External database links:  
ALPHAFOLD:
 P42911
ECOCYC:
 AGAD-MONOMER
ECOLIWIKI:
 b3140
INTERPRO:
 IPR004704
PFAM:
 PF03613
PRIDE:
 P42911
PRODB:
 PRO_000022067
PROSITE:
 PS51108
REFSEQ:
 NP_417609
UNIPROT:
 P42911


Operon      
Name: agaS-kbaY-agaBCDI         
Operon arrangement:
Transcription unit        Promoter
agaSYBCDI


Transcriptional Regulation      
Display Regulation             
Repressed by: AgaR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Reizer J., Ramseier TM., Reizer A., Charbit A., Saier MH., 1996, Novel phosphotransferase genes revealed by bacterial genome sequencing: a gene cluster encoding a putative N-acetylgalactosamine metabolic pathway in Escherichia coli., Microbiology 142 ( Pt 2):231-50

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