RegulonDB RegulonDB 10.9: Gene Form
   

agaI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

agaD agaI yraH agaC yraHp5 yraHp5 yraHp9 yraHp9 yraHp4 yraHp4 yraHp7 yraHp7 yraHp10 yraHp10 yraHp6 yraHp6 yraHp11 yraHp11 yraHp8 yraHp8

Gene      
Name: agaI    Texpresso search in the literature
Synonym(s): ECK3129, G7636, b3141, yraG
Genome position(nucleotides): 3286270 --> 3287025 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.26
External database links:  
ASAP:
ABE-0010317
ECHOBASE:
EB2625
ECOLIHUB:
agaI
OU-MICROARRAY:
b3141
STRING:
511145.b3141
COLOMBOS: agaI


Product      
Name: putative deaminase AgaI
Synonym(s): AgaI, YraG
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 27.724
Isoelectric point: 6.084
Motif(s):
 
Type Positions Sequence
28 -> 239 YTALSERASEYLLAVIRSKPNAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATDRFLTAKVSTAIPASFL

 

Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism
Gene Ontology Terms (GO)  
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
molecular_function GO:0016787 - hydrolase activity
GO:0004342 - glucosamine-6-phosphate deaminase activity
GO:0042802 - identical protein binding
GO:0043877 - galactosamine-6-phosphate isomerase activity
biological_process GO:0006043 - glucosamine catabolic process
GO:0005975 - carbohydrate metabolic process
GO:0006044 - N-acetylglucosamine metabolic process
GO:0006046 - N-acetylglucosamine catabolic process
GO:0006048 - UDP-N-acetylglucosamine biosynthetic process
GO:0019262 - N-acetylneuraminate catabolic process
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-9069N
ECOCYC:
G7636-MONOMER
ECOLIWIKI:
b3141
INTERPRO:
IPR006148
INTERPRO:
IPR037171
INTERPRO:
IPR018321
INTERPRO:
IPR004547
MODBASE:
P42912
PANTHER:
PTHR11280
PFAM:
PF01182
PRIDE:
P42912
PROSITE:
PS01161
REFSEQ:
NP_417610
SMR:
P42912
UNIPROT:
P42912


Operon      
Name: agaS-kbaY-agaBCDI         
Operon arrangement:
Transcription unit        Promoter
agaSYBCDI


Transcriptional Regulation      
Display Regulation             
Repressed by: AgaR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yraHp8 3287276 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp11 3287278 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp6 3287291 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp6 3287291 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp10 3287362 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp7 3287364 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp4 3287365 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp9 3287401 forward Similarity to the consensus
Read more >
[ICWHO] [1]
  promoter yraHp5 3287405 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


RegulonDB