RegulonDB RegulonDB 10.9: Gene Form
   

ytfJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ytfI ytfJ ytfK ytfL5\' PhoB PhoB ytfKp ytfKp TSS_5072 TSS_5072 ytfJp ytfJp

Gene      
Name: ytfJ    Texpresso search in the literature
Synonym(s): ECK4212, G7871, b4216, ecfJ
Genome position(nucleotides): 4438708 <-- 4439262 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
52.43
External database links:  
ASAP:
ABE-0013792
ECHOBASE:
EB2403
ECOLIHUB:
ytfJ
OU-MICROARRAY:
b4216
STRING:
511145.b4216
COLOMBOS: ytfJ


Product      
Name: PF09695 family protein YtfJ
Synonym(s): EcfJ, YtfJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: periplasmic space
Molecular weight: 20.421
Isoelectric point: 8.463
Motif(s):
 
Type Positions Sequence
1 -> 20 MTLRKILALTCLLLPMMASA
24 -> 181 ETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQK
21 -> 184 HQFETGQRVPPIGITDRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNTDDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVALGAWQLDEESSAVVVLDKDGRVQWAKDGALTPEEVQQVMDLLQKLLK

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0042597 - periplasmic space
Note(s): Note(s): ...[more].
Reference(s): [1] Guionet A., et al., 2014
External database links:  
ECOCYC:
G7871-MONOMER
ECOLIWIKI:
b4216
INTERPRO:
IPR006513
PFAM:
PF09695
PRIDE:
P39187
REFSEQ:
NP_418637
UNIPROT:
P39187


Operon      
Name: ytfJ         
Operon arrangement:
Transcription unit        Promoter
ytfJ


Regulation by small RNA    
  Display Regulation
small RNA spf


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5072 4439413 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Guionet A., Joubert-Durigneux V., Packan D., Cheype C., Garnier JP., David F., Zaepffel C., Leroux RM., Teissie J., Blanckaert V., 2014, Effect of nanosecond pulsed electric field on Escherichia coli in water: inactivation and impact on protein changes., J Appl Microbiol 117(3):721-8

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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